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Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia

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dc.contributor.authorHonorio Coronado, Euridice N.
dc.contributor.authorBlanc-Jolivet, Celine
dc.contributor.authorMader, Malte
dc.contributor.authorGarcia-Davila, Carmen R.
dc.contributor.authorSebbenn, Alexandre M.
dc.contributor.authorMeyer-Sand, Barbara R. V. [UNESP]
dc.contributor.authorParedes-Villanueva, Kathelyn
dc.contributor.authorTysklind, Niklas
dc.contributor.authorTroispoux, Valerie
dc.contributor.authorMassot, Marie
dc.contributor.authorDegen, Bernd
dc.contributor.institutionIIAP
dc.contributor.institutionThunen Inst Forest Genet
dc.contributor.institutionInst Florestal Sao Paulo
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionUniv Autonoma Gabriel Rene Moreno
dc.contributor.institutionUniv Guyane
dc.contributor.institutionINRA
dc.date.accessioned2019-10-04T12:40:45Z
dc.date.available2019-10-04T12:40:45Z
dc.date.issued2019-09-01
dc.description.abstractWe developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia.en
dc.description.affiliationIIAP, Ave Jose A Quinones Km 2-5, Iquitos, Peru
dc.description.affiliationThunen Inst Forest Genet, Sieker Landstr 2, D-22927 Grosshansdorf, Germany
dc.description.affiliationInst Florestal Sao Paulo, CP 1322, BR-01059970 Sao Paulo, SP, Brazil
dc.description.affiliationUniv Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil
dc.description.affiliationUniv Autonoma Gabriel Rene Moreno, Fac Ciencias Agr, Lab Dendrocronol, Carrera Ingn Forestal, Km 9 Carretera Norte, El Vallecito, Santa Cruz, Bolivia
dc.description.affiliationUniv Guyane, Univ Antilles, CNRS, INRA,UMR0745 EcoFoG,AgroParisTech,Cirad, Campus Agron,Ave France,BP97387, Kourou, France
dc.description.affiliationINRA, Plateforme Genome Transcriptome Bordeaux, Site Pierroton Batiment Artiga,69 Route Arcachon, F-33610 Cestas, France
dc.description.affiliationUnespUniv Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil
dc.description.sponsorshipGerman Federal Ministry of Food and Agriculture (BMEL)
dc.description.sponsorshipPrograma Nacional de Innovacion para la Competitividad y Productividad
dc.description.sponsorshipConseil Regional d'Aquitaine
dc.description.sponsorshipEuropean Union, FEDER
dc.description.sponsorshipIdPrograma Nacional de Innovacion para la Competitividad y Productividad: 381-PNICP-PIAP-2014
dc.description.sponsorshipIdConseil Regional d'Aquitaine: 20030304002FA
dc.description.sponsorshipIdConseil Regional d'Aquitaine: 20040305003FA
dc.description.sponsorshipIdEuropean Union, FEDER: 2003227
dc.description.sponsorshipIdEuropean Union, FEDER: ANR-10-EQPX-16-01
dc.description.sponsorshipIdEuropean Union, FEDER: ANR-10-LABX-25-01
dc.format.extent333-336
dc.identifierhttp://dx.doi.org/10.1007/s12686-019-01081-3
dc.identifier.citationConservation Genetics Resources. Dordrecht: Springer, v. 11, n. 3, p. 333-336, 2019.
dc.identifier.doi10.1007/s12686-019-01081-3
dc.identifier.issn1877-7252
dc.identifier.urihttp://hdl.handle.net/11449/186035
dc.identifier.wosWOS:000480748400021
dc.language.isoeng
dc.publisherSpringer
dc.relation.ispartofConservation Genetics Resources
dc.rights.accessRightsAcesso aberto
dc.sourceWeb of Science
dc.subjectCumaru
dc.subjectTimber species
dc.subjectSNP
dc.subjectMassARRAY
dc.titleDevelopment of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazoniaen
dc.typeArtigo
dcterms.licensehttp://www.springer.com/open+access/authors+rights?SGWID=0-176704-12-683201-0
dcterms.rightsHolderSpringer
dspace.entity.typePublication
unesp.departmentFitotecnia, Tecnologia de Alimentos e Socioeconomia - FEISpt

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Ilha Solteira - FEIS - Faculdade de Engenharia