Publicação: A framework radiation hybrid map of buffalo chromosome 1 ordering scaffolds from buffalo genome sequence assembly
| dc.contributor.author | Stafuzza, N. B. [UNESP] | |
| dc.contributor.author | Naressi, B. C. M. [UNESP] | |
| dc.contributor.author | Yang, E. | |
| dc.contributor.author | Cai, J. J. | |
| dc.contributor.author | Amaral-Trusty, M. E. J. [UNESP] | |
| dc.contributor.institution | Universidade Estadual Paulista (Unesp) | |
| dc.contributor.institution | Texas A&M Univ | |
| dc.date.accessioned | 2018-11-26T16:17:25Z | |
| dc.date.available | 2018-11-26T16:17:25Z | |
| dc.date.issued | 2015-01-01 | |
| dc.description.abstract | River buffalo chromosome 1 (BBU1) is a sub-metacentric chromosome homologous to bovine chromosomes 1 and 27. In this study, we constructed a new framework radiation hybrid (RH) map from BBU1 using BBURH5000 panel adding nine new genes (ADRB3, ATP2C1, COPB2, CRYGS, P2RY1, SLC5A3, SLC20A2, SST, and ZDHHC2) and one microsatellite (CSSM043) to the set of markers previously mapped on BBU1. The new framework RH map of BBU1 contained 141 markers (55 genes, 2 ESTs, 10 microsatellites, and 74 SNPs) distributed within one to sequences from bovine chromosomes 1 and 27 revealed an inversion close to the telomeric region. In addition, we ordered a set of 34 scaffolds from the buffalo genome assembly UMD_CASPUR_WB_2.0. The RH map could provide a valuable tool to order scaffolds from the buffalo genome sequence, contributing to its annotation. | en |
| dc.description.affiliation | Univ Estadual Paulista, Inst Biociencias Letras & Ciencias Exatas, Dept Biol, Sao Jose Do Rio Preto, SP, Brazil | |
| dc.description.affiliation | Texas A&M Univ, Dept Vet Integrat Biosci, College Stn, TX USA | |
| dc.description.affiliationUnesp | Univ Estadual Paulista, Inst Biociencias Letras & Ciencias Exatas, Dept Biol, Sao Jose Do Rio Preto, SP, Brazil | |
| dc.description.sponsorship | Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) | |
| dc.description.sponsorshipId | FAPESP: 2011/11889-3 | |
| dc.description.sponsorshipId | FAPESP: 2011/02478-0 | |
| dc.format.extent | 13096-13104 | |
| dc.identifier | http://dx.doi.org/10.4238/2015.October.26.5 | |
| dc.identifier.citation | Genetics And Molecular Research. Ribeirao Preto: Funpec-editora, v. 14, n. 4, p. 13096-13104, 2015. | |
| dc.identifier.doi | 10.4238/2015.October.26.5 | |
| dc.identifier.issn | 1676-5680 | |
| dc.identifier.uri | http://hdl.handle.net/11449/160962 | |
| dc.identifier.wos | WOS:000364582000005 | |
| dc.language.iso | eng | |
| dc.publisher | Funpec-editora | |
| dc.relation.ispartof | Genetics And Molecular Research | |
| dc.rights.accessRights | Acesso restrito | |
| dc.source | Web of Science | |
| dc.subject | Bubalus bubalis | |
| dc.subject | Chromosome 1 | |
| dc.subject | Comparative map | |
| dc.subject | Radiation hybrid mapping | |
| dc.title | A framework radiation hybrid map of buffalo chromosome 1 ordering scaffolds from buffalo genome sequence assembly | en |
| dc.type | Artigo | |
| dcterms.rightsHolder | Funpec-editora | |
| dspace.entity.type | Publication | |
| unesp.campus | Universidade Estadual Paulista (Unesp), Instituto de Biociências Letras e Ciências Exatas, São José do Rio Preto | pt |
| unesp.department | Biologia - IBILCE | pt |