Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees
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Data
2019-09-01
Autores
Chaves, Camila L.
Blanc-Jolivet, Celine
Sebbenn, Alexandre M.
Mader, Malte
Meyer-Sand, Barbara R. V. [UNESP]
Paredes-Villanueva, Kathelyn
Honorio Coronado, Euridice N.
Garcia-Davila, Carmen
Tysklind, Niklas
Troispoux, Valerie
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Editor
Springer
Resumo
We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.
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Palavras-chave
DNA fingerprints, Geographical origin, MiSeq, RADSeq
Como citar
Conservation Genetics Resources. Dordrecht: Springer, v. 11, n. 3, p. 329-331, 2019.