CitrusKB: A comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stages

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dc.contributor.authorFerrasa, Adriano
dc.contributor.authorMurata, Mayara M. [UNESP]
dc.contributor.authorCofre, Teresa D. C. G. [UNESP]
dc.contributor.authorCavallini, Juliana S. [UNESP]
dc.contributor.authorPeron, Gustavo [UNESP]
dc.contributor.authorJulião, Maria H. M. [UNESP]
dc.contributor.authorBelasque, José
dc.contributor.authorFerreira, Henrique [UNESP]
dc.contributor.authorFerro, Maria Inês T. [UNESP]
dc.contributor.authorLeite, Rui P.
dc.contributor.authorPenha, Helen A. [UNESP]
dc.contributor.authorCarvalho, Flávia M. S. [UNESP]
dc.contributor.authorVarani, Alessandro M. [UNESP]
dc.contributor.authorHerai, Roberto H.
dc.contributor.authorFerro, Jesus A. [UNESP]
dc.contributor.institutionUniversidade Estadual de Ponta Grossa (UEPG)
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionPontifícia Universidade Católica Do Paraná (PUCPR)
dc.contributor.institutionUniversidade de São Paulo (USP)
dc.contributor.institutionLondrina
dc.contributor.institutionUniversidade Norte Do Paraná (UNOPAR)
dc.contributor.institutionEstrada Velha de Taquaritinga
dc.date.accessioned2021-06-25T11:07:06Z
dc.date.available2021-06-25T11:07:06Z
dc.date.issued2020-01-01
dc.description.abstractCitrus canker type A is a serious disease caused by Xanthomonas citri subsp. citri (X. citri), which is responsible for severe losses to growers and to the citrus industry worldwide. To date, no canker-resistant citrus genotypes are available, and there is limited information regarding the molecular and genetic mechanisms involved in the early stages of the citrus canker development. Here, we present the CitrusKB knowledge base. This is the first in vivo interactome database for different citrus cultivars, and it was produced to provide a valuable resource of information on citrus and their interaction with the citrus canker bacterium X. citri. CitrusKB provides tools for a user-friendly web interface to let users search and analyse a large amount of information regarding eight citrus cultivars with distinct levels of susceptibility to the disease, with controls and infected plants at different stages of infection by the citrus canker bacterium X. citri. Currently, CitrusKB comprises a reference citrus genome and its transcriptome, expressed transcripts, pseudogenes and predicted genomic variations (SNPs and SSRs). The updating process will continue over time by the incorporation of novel annotations and analysis tools. We expect that CitrusKB may substantially contribute to the field of citrus genomics. CitrusKB is accessible at http://bioinfo.deinfo.uepg.br/citrus. Users can download all the generated raw sequences and generated datasets by this study from the CitrusKB website.en
dc.description.affiliationDepartamento de Informática Universidade Estadual de Ponta Grossa (UEPG), Av. Carlos Cavalcanti, 4748
dc.description.affiliationDepartamento de Tecnologia Universidade Estadual Paulista (UNESP), Via de Acesso Prof. Paulo Donato Castellane s/n
dc.description.affiliationGraduate Program in Health Sciences School of Medicine Pontifícia Universidade Católica Do Paraná (PUCPR), R. Imaculada Conceição, 1155
dc.description.affiliationDepartamento de Fitopatologia e Nematologia Escola Superior de Agricultura 'Luiz de Queiroz' Universidade de São Paulo (USP), Av. Pádua Dias, 11
dc.description.affiliationDepartamento de Biologia Geral e Aplicada Instituto de Biociências Universidade Estadual Paulista (UNESP), Av. 24-A, 1515
dc.description.affiliationInstituto Agronômico Do Paraná (IAPAR) Londrina, Rod. Celso Garcia Cid, km 375
dc.description.affiliationDiretoria de PÓs-Graduação Stricto Sensu Universidade Norte Do Paraná (UNOPAR), Av. Paris, 675
dc.description.affiliationInprenha Biotecnologia e Desenvolvimento Avançado Ltda Fazenda Lagoinha Estrada Velha de Taquaritinga, Km 04
dc.description.affiliationUnespDepartamento de Tecnologia Universidade Estadual Paulista (UNESP), Via de Acesso Prof. Paulo Donato Castellane s/n
dc.description.affiliationUnespDepartamento de Biologia Geral e Aplicada Instituto de Biociências Universidade Estadual Paulista (UNESP), Av. 24-A, 1515
dc.identifierhttp://dx.doi.org/10.1093/database/baaa081
dc.identifier.citationDatabase, v. 2020.
dc.identifier.doi10.1093/database/baaa081
dc.identifier.issn1758-0463
dc.identifier.scopus2-s2.0-85096083436
dc.identifier.urihttp://hdl.handle.net/11449/208144
dc.language.isoeng
dc.relation.ispartofDatabase
dc.sourceScopus
dc.titleCitrusKB: A comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stagesen
dc.typeArtigo

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Artigos - Ciências Biológicas - FCFAR