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Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees

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dc.contributor.authorChaves, Camila L.
dc.contributor.authorBlanc-Jolivet, Celine
dc.contributor.authorSebbenn, Alexandre M.
dc.contributor.authorMader, Malte
dc.contributor.authorMeyer-Sand, Barbara R. V. [UNESP]
dc.contributor.authorParedes-Villanueva, Kathelyn
dc.contributor.authorHonorio Coronado, Euridice N.
dc.contributor.authorGarcia-Davila, Carmen
dc.contributor.authorTysklind, Niklas
dc.contributor.authorTroispoux, Valerie
dc.contributor.authorMassot, Marie
dc.contributor.authorDegen, Bernd
dc.contributor.institutionUniversidade de São Paulo (USP)
dc.contributor.institutionThunen Inst Forest Genet
dc.contributor.institutionInst Florestal Sao Paulo
dc.contributor.institutionUniv Autonoma Gabriel Rene Moreno
dc.contributor.institutionIIAP
dc.contributor.institutionUniv Guyane
dc.contributor.institutionUniv Bordeaux
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.date.accessioned2019-10-04T12:40:45Z
dc.date.available2019-10-04T12:40:45Z
dc.date.issued2019-09-01
dc.description.abstractWe developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.en
dc.description.affiliationUniv Sao Paulo, Luiz de Queiroz Coll Agr, Dept Forest Sci, Ave Padua Dias,11,POB 9, BR-13418900 Sao Paulo, Brazil
dc.description.affiliationThunen Inst Forest Genet, Sieker Landstr 2, D-22927 Grosshansdorf, Germany
dc.description.affiliationInst Florestal Sao Paulo, CP 1322, BR-01059970 Sao Paulo, SP, Brazil
dc.description.affiliationUniv Autonoma Gabriel Rene Moreno, Fac Ciencias Agr, Lab Dendrocronol, Carrera Ingn Forestal, Km 9 Carretera Norte, El Vallecito, Santa Cruz, Bolivia
dc.description.affiliationIIAP, LBGM, Ave Jose A Quinones Km 2-5, Iquitos, Peru
dc.description.affiliationUniv Guyane, Univ Antilles, CNRS, INRA,UMR0745 EcoFoG,AgroParisTech,Cirad, Campus Agron,Ave France,BP97387, Kourou, France
dc.description.affiliationUniv Bordeaux, INRA, BIOGECO, 69 Route Arcachon, F-33610 Cestas, France
dc.description.affiliationUniv Estadual Paulista, Dept Fitotecnia, Fac Engn Ilha Solteira, Ilha Solteira, SP, Brazil
dc.description.affiliationUnespUniv Estadual Paulista, Dept Fitotecnia, Fac Engn Ilha Solteira, Ilha Solteira, SP, Brazil
dc.description.sponsorshipGerman Federal Ministry of Food and Agriculture (BMEL)
dc.description.sponsorshipCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)
dc.description.sponsorshipInvestissements d'Avenir, Convention attributive d'aide EquipEx Xyloforest
dc.description.sponsorshipEuropean Union, FEDER
dc.description.sponsorshipIdInvestissements d'Avenir, Convention attributive d'aide EquipEx Xyloforest: ANR-10-EQPX-16-01
dc.description.sponsorshipIdEuropean Union, FEDER: ANR-10-EQPX-16-01
dc.description.sponsorshipIdEuropean Union, FEDER: 2003227
dc.description.sponsorshipIdEuropean Union, FEDER: ANR-10-LABX-25-01
dc.format.extent329-331
dc.identifierhttp://dx.doi.org/10.1007/s12686-018-1077-1
dc.identifier.citationConservation Genetics Resources. Dordrecht: Springer, v. 11, n. 3, p. 329-331, 2019.
dc.identifier.doi10.1007/s12686-018-1077-1
dc.identifier.issn1877-7252
dc.identifier.urihttp://hdl.handle.net/11449/186034
dc.identifier.wosWOS:000480748400020
dc.language.isoeng
dc.publisherSpringer
dc.relation.ispartofConservation Genetics Resources
dc.rights.accessRightsAcesso aberto
dc.sourceWeb of Science
dc.subjectDNA fingerprints
dc.subjectGeographical origin
dc.subjectMiSeq
dc.subjectRADSeq
dc.titleNuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea treesen
dc.typeArtigo
dcterms.licensehttp://www.springer.com/open+access/authors+rights?SGWID=0-176704-12-683201-0
dcterms.rightsHolderSpringer
dspace.entity.typePublication
unesp.departmentFitotecnia, Tecnologia de Alimentos e Socioeconomia - FEISpt

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Ilha Solteira - FEIS - Faculdade de Engenharia