Publicação: Development of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America
| dc.contributor.author | Meyer-Sand, Barbara R. V. [UNESP] | |
| dc.contributor.author | Blanc-Jolivet, Celine | |
| dc.contributor.author | Mader, Malte | |
| dc.contributor.author | Paredes-Villanueva, Kathelyn | |
| dc.contributor.author | Tysklind, Niklas | |
| dc.contributor.author | Sebbenn, Alexandre M. | |
| dc.contributor.author | Guichoux, Erwan | |
| dc.contributor.author | Degen, Bernd | |
| dc.contributor.institution | Universidade Estadual Paulista (Unesp) | |
| dc.contributor.institution | Thunen Inst Forest Genet | |
| dc.contributor.institution | Univ Autonoma Gabriel Rene Moreno | |
| dc.contributor.institution | Univ Guyane | |
| dc.contributor.institution | Inst Florestal Sao Paulo | |
| dc.contributor.institution | INRA Pierroton | |
| dc.date.accessioned | 2019-10-04T12:34:45Z | |
| dc.date.available | 2019-10-04T12:34:45Z | |
| dc.date.issued | 2018-12-01 | |
| dc.description.abstract | A combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a - MassARRAY (R) iPLEX (TM) platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studies. | en |
| dc.description.affiliation | Univ Estadual Paulista, Dept Fitotecnia Tecnol Alimentos & Socioecon, Fac Engn Ilha Solteira, Ilha Solteira, SP, Brazil | |
| dc.description.affiliation | Thunen Inst Forest Genet, Sieker Landstr 2, D-22927 Grosshansdorf, Germany | |
| dc.description.affiliation | Univ Autonoma Gabriel Rene Moreno, Fac Ciencias Agr, Carrera Ingn Forestal, Lab Dendrocronol, Km 6 Carretera Norte, El Vallecito, Santa Cruz, Bolivia | |
| dc.description.affiliation | Univ Guyane, Univ Antilles, INRA, UMR0745 EcoFoG,AgroParisTech,Cirad,CNRS, Campus Agron,Ave France,BP97387, Kourou, France | |
| dc.description.affiliation | Inst Florestal Sao Paulo, CP 1322, BR-01059970 Sao Paulo, SP, Brazil | |
| dc.description.affiliation | INRA Pierroton, Plateforme Genome Transcriptome Bordeaux, 69 Route Arcachon, F-33610 Cestas, France | |
| dc.description.affiliationUnesp | Univ Estadual Paulista, Dept Fitotecnia Tecnol Alimentos & Socioecon, Fac Engn Ilha Solteira, Ilha Solteira, SP, Brazil | |
| dc.description.sponsorship | German Federal Ministry of Food and Agriculture | |
| dc.description.sponsorship | Conseil Regional d'Aquitaine | |
| dc.description.sponsorship | European Union, FEDER | |
| dc.description.sponsorship | Investissements d'avenir | |
| dc.description.sponsorship | Chico Mendes Biodiversity Institute | |
| dc.description.sponsorshipId | Conseil Regional d'Aquitaine: 20030304002FA | |
| dc.description.sponsorshipId | Conseil Regional d'Aquitaine: 20040305003FA | |
| dc.description.sponsorshipId | European Union, FEDER: 2003227 | |
| dc.description.sponsorshipId | Investissements d'avenir: ANR-10-EQPX-16-01 | |
| dc.description.sponsorshipId | Investissements d'avenir: CEBA: ANR-10-LABX-25-01 | |
| dc.description.sponsorshipId | Chico Mendes Biodiversity Institute: 47960 | |
| dc.description.sponsorshipId | Chico Mendes Biodiversity Institute: 49369 | |
| dc.format.extent | 779-781 | |
| dc.identifier | http://dx.doi.org/10.1007/s12686-017-0928-5 | |
| dc.identifier.citation | Conservation Genetics Resources. Dordrecht: Springer, v. 10, n. 4, p. 779-781, 2018. | |
| dc.identifier.doi | 10.1007/s12686-017-0928-5 | |
| dc.identifier.issn | 1877-7252 | |
| dc.identifier.uri | http://hdl.handle.net/11449/185351 | |
| dc.identifier.wos | WOS:000456651300042 | |
| dc.language.iso | eng | |
| dc.publisher | Springer | |
| dc.relation.ispartof | Conservation Genetics Resources | |
| dc.rights.accessRights | Acesso aberto | |
| dc.source | Web of Science | |
| dc.subject | Handroanthus sp. | |
| dc.subject | Single nucleotide polymorphism | |
| dc.subject | MassARRAY | |
| dc.title | Development of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America | en |
| dc.type | Artigo | |
| dcterms.license | http://www.springer.com/open+access/authors+rights?SGWID=0-176704-12-683201-0 | |
| dcterms.rightsHolder | Springer | |
| dspace.entity.type | Publication | |
| unesp.author.orcid | 0000-0002-4808-2717[3] | |
| unesp.department | Fitotecnia, Tecnologia de Alimentos e Socioeconomia - FEIS | pt |