Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia
| dc.contributor.author | Sebbenn, Alexandre M. | |
| dc.contributor.author | Blanc-Jolivet, Celine | |
| dc.contributor.author | Mader, Malte | |
| dc.contributor.author | Meyer-Sand, Barbara R. V. [UNESP] | |
| dc.contributor.author | Paredes-Villanueva, Kathelyn | |
| dc.contributor.author | Honorio Coronado, Euridice N. | |
| dc.contributor.author | Garcia-Davila, Carmen | |
| dc.contributor.author | Tysklind, Niklas | |
| dc.contributor.author | Troispoux, Valerie | |
| dc.contributor.author | Delcamp, Adline | |
| dc.contributor.author | Degen, Bernd | |
| dc.contributor.institution | Inst Florestal Sao Paulo | |
| dc.contributor.institution | Thunen Inst Forest Genet | |
| dc.contributor.institution | Universidade Estadual Paulista (Unesp) | |
| dc.contributor.institution | Univ Autonoma Gabriel Rene Moreno | |
| dc.contributor.institution | IIAP | |
| dc.contributor.institution | Univ Guyane | |
| dc.contributor.institution | Univ Bordeaux | |
| dc.date.accessioned | 2019-10-04T12:40:46Z | |
| dc.date.available | 2019-10-04T12:40:46Z | |
| dc.date.issued | 2019-09-01 | |
| dc.description.abstract | Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia. We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin. | en |
| dc.description.affiliation | Inst Florestal Sao Paulo, CP 1322, BR-01059970 Sao Paulo, SP, Brazil | |
| dc.description.affiliation | Thunen Inst Forest Genet, Sieker Landstr 2, D-22927 Grosshansdorf, Germany | |
| dc.description.affiliation | Univ Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil | |
| dc.description.affiliation | Univ Autonoma Gabriel Rene Moreno, Fac Ciencias Agr, Lab Dendrocronol, Carrera Ingn Forestal, Km 9 Carretera Norte, El Vallecito, Santa Cruz, Bolivia | |
| dc.description.affiliation | IIAP, Ave Jose A Quinones Km 2-5, Iquitos, Peru | |
| dc.description.affiliation | Univ Guyane, Univ Antilles, CNRS, INRA,UMR0745 EcoFoG,AgroParisTech,Cirad, Campus Agron,Ave France,BP97387, Kourou, France | |
| dc.description.affiliation | Univ Bordeaux, INRA, BIOGECO, F-33610 Cestas, France | |
| dc.description.affiliationUnesp | Univ Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil | |
| dc.description.sponsorship | German Federal Ministry of Food and Agriculture | |
| dc.description.sponsorship | Conseil Regional d'Aquitaine | |
| dc.description.sponsorship | European Union | |
| dc.description.sponsorship | FEDER | |
| dc.description.sponsorship | Investissements d'avenir | |
| dc.description.sponsorshipId | Conseil Regional d'Aquitaine: 20030304002FA | |
| dc.description.sponsorshipId | Conseil Regional d'Aquitaine: 20040305003FA | |
| dc.description.sponsorshipId | FEDER: 2003227 | |
| dc.description.sponsorshipId | Investissements d'avenir: ANR-10-EQPX-16-01 | |
| dc.description.sponsorshipId | Investissements d'avenir: CEBA: ANR-10-LABX-25-01 | |
| dc.description.sponsorshipId | : 001-2016-SERFOR-DGGSPFFS-DGSPF | |
| dc.format.extent | 341-343 | |
| dc.identifier | http://dx.doi.org/10.1007/s12686-019-01097-9 | |
| dc.identifier.citation | Conservation Genetics Resources. Dordrecht: Springer, v. 11, n. 3, p. 341-343, 2019. | |
| dc.identifier.doi | 10.1007/s12686-019-01097-9 | |
| dc.identifier.issn | 1877-7252 | |
| dc.identifier.uri | http://hdl.handle.net/11449/186036 | |
| dc.identifier.wos | WOS:000480748400023 | |
| dc.language.iso | eng | |
| dc.publisher | Springer | |
| dc.relation.ispartof | Conservation Genetics Resources | |
| dc.rights.accessRights | Acesso aberto | |
| dc.source | Web of Science | |
| dc.subject | DNA fingerprints | |
| dc.subject | Geographical origin | |
| dc.subject | MiSeq | |
| dc.subject | RADSeq | |
| dc.subject | Tropical timber | |
| dc.subject | MassARRAY | |
| dc.subject | Jacaranda copaia | |
| dc.title | Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia | en |
| dc.type | Artigo | |
| dcterms.license | http://www.springer.com/open+access/authors+rights?SGWID=0-176704-12-683201-0 | |
| dcterms.rightsHolder | Springer | |
| dspace.entity.type | Publication | |
| unesp.department | Fitotecnia, Tecnologia de Alimentos e Socioeconomia - FEIS | pt |