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Parmodel: a web server for automated comparative modeling of proteins

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dc.contributor.authorUchoa, H. B.
dc.contributor.authorJorge, G. E.
dc.contributor.authorDa Silveira, NJF
dc.contributor.authorCamera, J. C.
dc.contributor.authorCanduri, F.
dc.contributor.authorDe Azevedo, W. F.
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionInstituto Butantan
dc.date.accessioned2014-05-20T15:27:13Z
dc.date.available2014-05-20T15:27:13Z
dc.date.issued2004-12-24
dc.description.abstractParmodel is a web server for automated comparative modeling and evaluation of protein structures. The aim of this tool is to help inexperienced users to perform modeling, assessment, visualization, and optimization of protein models as well as crystallographers to evaluate structures solved experimentally. It is subdivided in four modules: Parmodel Modeling, Parmodel Assessment, Parmodel Visualization, and Parmodel Optimization. The main module is the Parmodel Modeling that allows the building of several models ford a same protein in a reduced time, through the distribution of modeling processes on a Beowulf cluster. Parmodel automates and integrates the main softwares used in comparative modeling as MODELLER, Whatcheck, Procheck, Raster3D, Molscript, and Gromacs. This web server is freely accessible at http://www.biocristalografia.df.ibilce.unesp.br/tools/parmodel. (C) 2004 Elsevier B.V. All rights reserved.en
dc.description.affiliationUNESP, Dept Fis, BR-15054000 Sao Jose do Rio Preto, SP, Brazil
dc.description.affiliationInstButantan, Ctr Appl Toxicol, BR-05503900 São Paulo, Brazil
dc.description.affiliationUnespUNESP, Dept Fis, BR-15054000 Sao Jose do Rio Preto, SP, Brazil
dc.format.extent1481-1486
dc.identifierhttp://dx.doi.org/10.1016/j.bbrc.2004.10.192
dc.identifier.citationBiochemical and Biophysical Research Communications. San Diego: Academic Press Inc. Elsevier B.V., v. 325, n. 4, p. 1481-1486, 2004.
dc.identifier.dimensionspub.1033182948
dc.identifier.doi10.1016/j.bbrc.2004.10.192
dc.identifier.issn0006-291X
dc.identifier.issn1090-2104
dc.identifier.orcid0000-0001-8359-9220
dc.identifier.orcid0000-0001-8640-357X
dc.identifier.pmid15555595
dc.identifier.urihttp://hdl.handle.net/11449/37250
dc.identifier.wosWOS:000225557500053
dc.language.isoeng
dc.publisherElsevier B.V.
dc.publisherElsevier
dc.relation.ispartofBiochemical and Biophysical Research Communications
dc.relation.ispartofjcr2.559
dc.rights.accessRightsAcesso restritopt
dc.sourceWeb of Science
dc.sourceDimensions
dc.subjectbioinformaticspt
dc.subjectcomparative modelingpt
dc.subjectstructural analysispt
dc.titleParmodel: a web server for automated comparative modeling of proteinsen
dc.typeArtigopt
dcterms.licensehttp://www.elsevier.com/about/open-access/open-access-policies/article-posting-policy
dcterms.rightsHolderElsevier B.V.
dspace.entity.typePublication
relation.isOrgUnitOfPublication43c38943-bd6f-4fb6-a9a5-8482a1f632c0
relation.isOrgUnitOfPublication.latestForDiscovery43c38943-bd6f-4fb6-a9a5-8482a1f632c0
unesp.campusUniversidade Estadual Paulista (UNESP), Instituto de Biociências, Letras e Ciências Exatas, São José do Rio Pretopt
unesp.departmentFísica - IBILCEpt

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São José do Rio Preto - IBILCE - Instituto de Biociências, Letras e Ciências Exatas