Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species

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dc.contributor.authorPerini, Violeta da Rocha
dc.contributor.authorLeles, Bruno [UNESP]
dc.contributor.authorFurtado, Carolina
dc.contributor.authorProsdocimi, Francisco
dc.contributor.institutionUniversidade Federal do Rio de Janeiro (UFRJ)
dc.contributor.institutionMyleus Biotechnol
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionInst Nacl Canc
dc.date.accessioned2018-11-26T17:16:37Z
dc.date.available2018-11-26T17:16:37Z
dc.date.issued2016-01-01
dc.description.abstractA partial genome dataset was sequenced for the orchid Cattleya crispata using both Illumina and 454 technologies. The chloroplast genome was assembled using iterative runs of MIRA software that yielded a circular molecule with 148,343 bp in length and deposited in GenBank database ( Accession Number KP168671). The plastid genome conserved the quadripartite structure present in most Orchidaceae chloroplasts and was composed by 79 protein-coding genes, 39 tRNAs and 8 rRNAs. Genome structure, gene order and orientation were similar to previously described chloroplasts for Cymbidium orchids, differing in gene order for petN and psbM genes. Data described here contain the first report of a complete chloroplast for the Neotropical subtribe Laeliinae and may contribute to improve the phylogenetic resolution and allow the development of new molecular markers for population genetic studies of orchids.en
dc.description.affiliationUniv Fed Rio de Janeiro, Inst Bioquim Med Leopoldo Meis, Lab Genom & Biodiversidade, Rio De Janeiro, Brazil
dc.description.affiliationMyleus Biotechnol, Belo Horizonte, MG, Brazil
dc.description.affiliationUniv Estadual Paulista, Dept Ecol, Rio Claro, SP, Brazil
dc.description.affiliationInst Nacl Canc, Div Genet, Rio De Janeiro, Brazil
dc.description.affiliationUnespUniv Estadual Paulista, Dept Ecol, Rio Claro, SP, Brazil
dc.description.sponsorshipFundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)
dc.description.sponsorshipFundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)
dc.description.sponsorshipConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
dc.description.sponsorshipFundacao Boticario
dc.format.extent4075-4077
dc.identifierhttp://dx.doi.org/10.3109/19401736.2014.1003850
dc.identifier.citationMitochondrial Dna Part A. Abingdon: Taylor & Francis Ltd, v. 27, n. 6, p. 4075-4077, 2016.
dc.identifier.doi10.3109/19401736.2014.1003850
dc.identifier.fileWOS000393307200090.pdf
dc.identifier.issn2470-1394
dc.identifier.urihttp://hdl.handle.net/11449/162419
dc.identifier.wosWOS:000393307200090
dc.language.isoeng
dc.publisherTaylor & Francis Ltd
dc.relation.ispartofMitochondrial Dna Part A
dc.relation.ispartofsjr0,150
dc.rights.accessRightsAcesso aberto
dc.sourceWeb of Science
dc.subjectEspinhaco
dc.subjectnext-generation-sequencing
dc.subjectorchid
dc.subjectplastid genome
dc.subjectrock outcrop
dc.titleComplete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous speciesen
dc.typeArtigo
dcterms.licensehttp://journalauthors.tandf.co.uk/permissions/reusingOwnWork.asp
dcterms.rightsHolderTaylor & Francis Ltd

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