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Computational Analysis of Transposable Elements and CircRNAs in Plants

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dc.contributor.authorOliveira, Liliane Santana
dc.contributor.authorPatera, Andressa Caroline
dc.contributor.authorDomingues, Douglas Silva [UNESP]
dc.contributor.authorSanches, Danilo Sipoli
dc.contributor.authorLopes, Fabricio Martins
dc.contributor.authorBugatti, Pedro Henrique
dc.contributor.authorSaito, Priscila Tiemi Maeda
dc.contributor.authorMaracaja-Coutinho, Vinicius
dc.contributor.authorDurham, Alan Mitchell
dc.contributor.authorPaschoal, Alexandre Rossi
dc.contributor.institutionFederal University of Technology—Paraná (UTFPR)
dc.contributor.institutionEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.contributor.institutionUniversidade Estadual Paulista (UNESP)
dc.contributor.institutionUniversidad de Chile
dc.contributor.institutionUniversidade de São Paulo (USP)
dc.date.accessioned2022-04-28T19:41:25Z
dc.date.available2022-04-28T19:41:25Z
dc.date.issued2021-01-01
dc.description.abstractThis chapter provides two main contributions: (1) a description of computational tools and databases used to identify and analyze transposable elements (TEs) and circRNAs in plants; and (2) data analysis on public TE and circRNA data. Our goal is to highlight the primary information available in the literature on circular noncoding RNAs and transposable elements in plants. The exploratory analysis performed on publicly available circRNA and TEs data help discuss four sequence features. Finally, we investigate the association on circRNAs:TE in plants in the model organism Arabidopsis thaliana.en
dc.description.affiliationDepartment of Computer Science Federal University of Technology—Paraná (UTFPR)
dc.description.affiliationEmbrapa Soja
dc.description.affiliationGroup of Genomics and Transcriptomes in Plants Instituto de Biociências de Rio Claro Universidade Estadual Paulista (UNESP)
dc.description.affiliationCentro de Modelamiento Molecular Biofísica y Bioinformática—CM2B2 Facultad de Ciencias Quimicas y Farmaceuticas Universidad de Chile
dc.description.affiliationDepartment of Computer Science Instituto de Matemática e Estatística Universidade de São Paulo (USP)
dc.description.affiliationUnespGroup of Genomics and Transcriptomes in Plants Instituto de Biociências de Rio Claro Universidade Estadual Paulista (UNESP)
dc.format.extent147-172
dc.identifierhttp://dx.doi.org/10.1007/978-1-0716-1645-1_9
dc.identifier.citationMethods in Molecular Biology, v. 2362, p. 147-172.
dc.identifier.doi10.1007/978-1-0716-1645-1_9
dc.identifier.issn1940-6029
dc.identifier.issn1064-3745
dc.identifier.scopus2-s2.0-85109502015
dc.identifier.urihttp://hdl.handle.net/11449/221925
dc.language.isoeng
dc.relation.ispartofMethods in Molecular Biology
dc.sourceScopus
dc.subjectBioinformatics
dc.subjectCircRNAs
dc.subjectCircular RNA
dc.subjectComputational methods
dc.subjectData analysis
dc.subjectDatabases
dc.subjectInteraction
dc.subjectMobile elements
dc.subjectNoncoding
dc.subjectTransposable elements
dc.titleComputational Analysis of Transposable Elements and CircRNAs in Plantsen
dc.typeCapítulo de livropt
dspace.entity.typePublication
unesp.campusUniversidade Estadual Paulista (UNESP), Instituto de Biociências, Rio Claropt

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Rio Claro - IB - Instituto de Biociências