SNP Markers as a Successful Molecular Tool for Assessing Species Identity and Geographic Origin of Trees in the Economically Important South American Legume Genus Dipteryx

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dc.contributor.authorHonorio Coronado, Euridice N.
dc.contributor.authorBlanc-Jolivet, Celine
dc.contributor.authorMader, Malte
dc.contributor.authorGarcia-Davila, Carmen R.
dc.contributor.authorGomero, David Aldana
dc.contributor.authordel Castillo Torres, Dennis
dc.contributor.authorFlores Llampazo, Gerardo
dc.contributor.authorHidalgo Pizango, Gabriel
dc.contributor.authorSebbenn, Alexandre M.
dc.contributor.authorMeyer-Sand, Barbara R. [UNESP]
dc.contributor.authorParedes-Villanueva, Kathelyn
dc.contributor.authorTysklind, Niklas
dc.contributor.authorTroispoux, Valerie
dc.contributor.authorMassot, Marie
dc.contributor.authorCarvalho, Catarina
dc.contributor.authorLima, Haroldo C. de
dc.contributor.authorCardoso, Domingos
dc.contributor.authorDegen, Bernd
dc.contributor.institutionInst Invest Amazonia Peruana IIAP
dc.contributor.institutionThunen Inst Forest Genet
dc.contributor.institutionInst Florestal Sao Paulo
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionUniv Autonoma Gabriel Rene Moreno
dc.contributor.institutionUniv Guyane
dc.contributor.institutionUniv Bordeaux
dc.contributor.institutionEscola Nacl Bot Trop
dc.contributor.institutionInst Pesquisas Jardim Bot Rio de Janeiro
dc.contributor.institutionUniversidade Federal da Bahia (UFBA)
dc.date.accessioned2021-06-25T12:22:16Z
dc.date.available2021-06-25T12:22:16Z
dc.date.issued2020-06-01
dc.description.abstractDipteryx timber has been heavily exploited in South America since 2000s due to the increasing international demand for hardwood. Developing tools for the genetic identification of Dipteryx species and their geographical origin can help to promote legal trading of timber. A collection of 800 individual trees, belonging to 6 different Dipteryx species, was genotyped based on 171 molecular markers. After the exclusion of markers out of Hardy Weinberg equilibrium or with no polymorphism or low amplification, 83 nuclear, 29 chloroplast, 13 mitochondrial single nucleotide polymorphisms (SNPs), and 2 chloroplast and 5 mitochondrial INDELS remained. Six genetic groups were identified using Bayesian Structure analyses of the nuclear SNPs, which corresponded to the different Dipteryx species collected in the field. Seventeen highly informative markers were identified as suitable for species identification and obtained self-assignment success rates to species level of 78-96%. An additional set of 15 molecular markers was selected to determine the different genetic clusters found in Dipteryx odorata and Dipteryx ferrea, obtaining self-assignment success rates of 91-100%. The success to assign samples to the correct country of origin using all or only the informative markers improved when using the nearest neighbor approach (69-92%) compared to the Bayesian approach (33-80%). While nuclear and chloroplast SNPs were more suitable for differentiating the different Dipteryx species, mitochondrial SNPs were ideal for determining the genetic clusters of D. odorata and D. ferrea. These 32 selected SNPs will be invaluable genetic tools for the accurate identification of species and country of origin of Dipteryx timber.en
dc.description.affiliationInst Invest Amazonia Peruana IIAP, Av Jose A Quinones Km 2-5, Iquitos, Peru
dc.description.affiliationThunen Inst Forest Genet, Sieker Landstr 2, D-22927 Grosshansdorf, Germany
dc.description.affiliationInst Florestal Sao Paulo, CP 1322, BR-01059970 Sao Paulo, SP, Brazil
dc.description.affiliationUniv Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil
dc.description.affiliationUniv Autonoma Gabriel Rene Moreno, Fac Ciencias Agr, Lab Dendrocronol, Carrera Ingn Forestal, Km 9 Carretera Norte, El Vallecito, Santa Cruz, Bolivia
dc.description.affiliationUniv Guyane, Univ Antilles, CNRS, INRA,UMR0745,EcoFoG,AgroParisTech,Cirad, Campus Agron,Ave France,BP97387, Kourou, France
dc.description.affiliationUniv Bordeaux, INRAE, BIOGECO, F-33610 Cestas, France
dc.description.affiliationEscola Nacl Bot Trop, Rua Pacheco Leao 2040, BR-22460030 Rio De Janeiro, RJ, Brazil
dc.description.affiliationInst Pesquisas Jardim Bot Rio de Janeiro, Rua Pacheco Leao 915, BR-22460030 Rio De Janeiro, RJ, Brazil
dc.description.affiliationUniv Fed Bahia, Inst Biol, Rua Barao de Jeremoabo S-N, BR-40170115 Salvador, BA, Brazil
dc.description.affiliationUnespUniv Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil
dc.description.sponsorshipGerman Federal Ministry of Food and Agriculture (BMEL) by the LargeScale-project (Forderkennzeichen)
dc.description.sponsorshipPrograma Nacional de Innovacion para la Competitividad y Productividad (Innovate Peru)
dc.description.sponsorshipConseil Regional d'Aquitaine
dc.description.sponsorshipEuropean Union, FEDER
dc.description.sponsorshipInvestissements d'avenir
dc.description.sponsorshipIdGerman Federal Ministry of Food and Agriculture (BMEL) by the LargeScale-project (Forderkennzeichen): 281-001-01
dc.description.sponsorshipIdPrograma Nacional de Innovacion para la Competitividad y Productividad (Innovate Peru): 381-PNICP-PIAP-2014
dc.description.sponsorshipIdConseil Regional d'Aquitaine: 20030304002FA
dc.description.sponsorshipIdConseil Regional d'Aquitaine: 20040305003FA
dc.description.sponsorshipIdEuropean Union, FEDER: 2003227
dc.description.sponsorshipIdInvestissements d'avenir: ANR-10-EQPX-16-01
dc.description.sponsorshipIdInvestissements d'avenir: CEBA: ANR-10-LABX-25-01
dc.format.extent346-356
dc.identifierhttp://dx.doi.org/10.1093/jhered/esaa011
dc.identifier.citationJournal Of Heredity. Cary: Oxford Univ Press Inc, v. 111, n. 4, p. 346-356, 2020.
dc.identifier.doi10.1093/jhered/esaa011
dc.identifier.issn0022-1503
dc.identifier.urihttp://hdl.handle.net/11449/209559
dc.identifier.wosWOS:000579338200003
dc.language.isoeng
dc.publisherOxford Univ Press Inc
dc.relation.ispartofJournal Of Heredity
dc.sourceWeb of Science
dc.subjectCumaru
dc.subjectgenetic assignment
dc.subjectLeguminosae
dc.subjecttimber verification
dc.titleSNP Markers as a Successful Molecular Tool for Assessing Species Identity and Geographic Origin of Trees in the Economically Important South American Legume Genus Dipteryxen
dc.typeArtigo
dcterms.licensehttp://www.oxfordjournals.org/access_purchase/self-archiving_policyb.html
dcterms.rightsHolderOxford Univ Press Inc
unesp.author.orcid0000-0003-3170-9939[8]
unesp.author.orcid0000-0001-7072-2656[17]

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Artigos - Fitotecnia, Tecnologia de Alimentos e Sócio Economia - FEIS