Consequence of paradigm shift with repeat landscapes in reptiles: Powerful facilitators of chromosomal rearrangements for diversity and evolution (running title: Genomic impact of repeats on chromosomal dynamics in reptiles)

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dc.contributor.authorAhmad, Syed Farhan
dc.contributor.authorSingchat, Worapong
dc.contributor.authorJehangir, Maryam [UNESP]
dc.contributor.authorPanthum, Thitipong
dc.contributor.authorSrikulnath, Kornsorn
dc.contributor.institutionKasetsart University
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionCenter of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE)
dc.contributor.institutionKasetsart University (OmiKU)
dc.contributor.institutionHiroshima University
dc.date.accessioned2020-12-12T01:31:19Z
dc.date.available2020-12-12T01:31:19Z
dc.date.issued2020-07-01
dc.description.abstractReptiles are notable for the extensive genomic diversity and species richness among amniote classes, but there is nevertheless a need for detailed genome-scale studies. Although the monophyletic amniotes have recently been a focus of attention through an increasing number of genome sequencing projects, the abundant repetitive portion of the genome, termed the “repeatome”, remains poorly understood across different lineages. Consisting predominantly of transposable elements or mobile and satellite sequences, these repeat elements are considered crucial in causing chromosomal rearrangements that lead to genomic diversity and evolution. Here, we propose major repeat landscapes in representative reptilian species, highlighting their evolutionary dynamics and role in mediating chromosomal rearrangements. Distinct karyotype variability, which is typically a conspicuous feature of reptile genomes, is discussed, with a particular focus on rearrangements correlated with evolutionary reorganization of micro-and macrochromosomes and sex chromosomes. The exceptional karyotype variation and extreme genomic diversity of reptiles are used to test several hypotheses concerning genomic structure, function, and evolution.en
dc.description.affiliationLaboratory of Animal Cytogenetics and Comparative Genomics (ACCG) Department of Genetics Faculty of Science Kasetsart University, 50 Ngamwongwan, Chatuchak
dc.description.affiliationSpecial Research Unit for Wildlife Genomics (SRUWG) Department of Forest Biology Faculty of Forestry Kasetsart University, 50 Ngamwongwan, Chatuchak
dc.description.affiliationIntegrative Genomics Lab-LGI Department of Structural and Functional Biology Institute of Bioscience at Botucatu São Paulo State University (UNESP)
dc.description.affiliationCenter for Advanced Studies in Tropical Natural Resources National Research University-Kasetsart University Kasetsart University
dc.description.affiliationCenter of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE)
dc.description.affiliationOmics Center for Agriculture Bioresources Food and Health Kasetsart University (OmiKU)
dc.description.affiliationAmphibian Research Center Hiroshima University, 1-3-1, Kagamiyama
dc.description.affiliationUnespIntegrative Genomics Lab-LGI Department of Structural and Functional Biology Institute of Bioscience at Botucatu São Paulo State University (UNESP)
dc.description.sponsorshipNuts, Bolts & Thingamajigs Foundation
dc.description.sponsorshipNational Science and Technology Development Agency
dc.description.sponsorshipBelgorod National Research University
dc.description.sponsorshipCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)
dc.description.sponsorshipAmerican Spinal Injury Association
dc.description.sponsorshipRockfall Foundation
dc.description.sponsorshipIdBelgorod National Research University: 6/2558
dc.description.sponsorshipIdCAPES: 88882.433287/2019-01
dc.description.sponsorshipIdBelgorod National Research University: 9/2559
dc.description.sponsorshipIdNational Science and Technology Development Agency: NSTDA P-19-52238
dc.description.sponsorshipIdAmerican Spinal Injury Association: P1851131
dc.description.sponsorshipIdRockfall Foundation: PHD60I0014
dc.description.sponsorshipIdRockfall Foundation: RSA6180075
dc.format.extent1-27
dc.identifierhttp://dx.doi.org/10.3390/genes11070827
dc.identifier.citationGenes, v. 11, n. 7, p. 1-27, 2020.
dc.identifier.doi10.3390/genes11070827
dc.identifier.issn2073-4425
dc.identifier.scopus2-s2.0-85088167320
dc.identifier.urihttp://hdl.handle.net/11449/199122
dc.language.isoeng
dc.relation.ispartofGenes
dc.sourceScopus
dc.subjectAmniote
dc.subjectChromosome
dc.subjectGenome
dc.subjectKaryotype
dc.subjectSex chromosome
dc.titleConsequence of paradigm shift with repeat landscapes in reptiles: Powerful facilitators of chromosomal rearrangements for diversity and evolution (running title: Genomic impact of repeats on chromosomal dynamics in reptiles)en
dc.typeResenha

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