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Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

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dc.contributor.authorGibbs, Richard A.
dc.contributor.authorTaylor, Jeremy F.
dc.contributor.authorVan Tassell, Curtis P.
dc.contributor.authorBarendse, William
dc.contributor.authorEversoie, Kallye A.
dc.contributor.authorGill, Clare A.
dc.contributor.authorGreen, Ronnie D.
dc.contributor.authorHamernik, Debora L.
dc.contributor.authorKappes, Steven M.
dc.contributor.authorLien, Sigbjorn
dc.contributor.authorMatukumalli, Lakshmi K.
dc.contributor.authorMurdoch, Brenda
dc.contributor.authorStella, Alessandra
dc.contributor.authorVilla-Angulo, Rafael
dc.contributor.authorWright, Mark
dc.contributor.authorAerts, Jan
dc.contributor.authorJann, Oliver
dc.contributor.authorNegrini, Riccardo
dc.contributor.authorSonstegard, Tad S.
dc.contributor.authorWilliams, John L.
dc.contributor.authorTaylor, Jeremy F.
dc.contributor.authorMcEwan, John C.
dc.contributor.authorVilla-Angulo, Rafael
dc.contributor.authorGoddard, Mike E.
dc.contributor.authorHayes, Ben J.
dc.contributor.authorBarendse, William
dc.contributor.authorBradley, Daniel G.
dc.contributor.authorBoettcher, Paul J.
dc.contributor.authorBustamante, Carlos D.
dc.contributor.authorda Silva, Marcos Barbosa
dc.contributor.authorLau, Lilian P. L.
dc.contributor.authorLiu, George E.
dc.contributor.authorNazareth, Lynne V.
dc.contributor.authorLynn, David J.
dc.contributor.authorPanzitta, Francesca
dc.contributor.authorSclep, Gert
dc.contributor.authorWright, Mark
dc.contributor.authorDodds, Ken G.
dc.contributor.authorSchnabel, Robert D.
dc.contributor.authorTaylor, Jeremy F.
dc.contributor.authorWeinstock, George M.
dc.contributor.authorWheeler, David A.
dc.contributor.authorAjmone-Marsan, Paolo
dc.contributor.authorBarendse, William
dc.contributor.authorBoettcher, Paul J.
dc.contributor.authorCaetano, Alexandre R.
dc.contributor.authorGarcia, José Fernando [UNESP]
dc.contributor.authorHanotte, Olivier
dc.contributor.authorMariani, Paola
dc.contributor.authorSkow, Loren C.
dc.contributor.authorWilliams, John L.
dc.contributor.authorCaetano, Alexandre R.
dc.contributor.authorDiallo, Boubacar
dc.contributor.authorGreen, Ronnie D.
dc.contributor.authorHailemariam, Lemecha
dc.contributor.authorHanotte, Olivier
dc.contributor.authorMartinez, Mario L.
dc.contributor.authorMorris, Chris A.
dc.contributor.authorSilva, Luiz O. C.
dc.contributor.authorSpelman, Richard J.
dc.contributor.authorTaylor, Jeremy F.
dc.contributor.authorMulatu, Woudyalew
dc.contributor.authorZhao, Keyan
dc.contributor.authorAbbey, Colette A.
dc.contributor.authorAgaba, Morris
dc.contributor.authorAraujo, Flabio R.
dc.contributor.authorBunch, Rowan J.
dc.contributor.authorBurton, James
dc.contributor.authorGill, Clare A.
dc.contributor.authorGorni, Chiara
dc.contributor.authorOlivier, Hanotte
dc.contributor.authorHarrison, Blair E.
dc.contributor.authorLuff, Bill
dc.contributor.authorMachado, Marco A.
dc.contributor.authorMariani, Paola
dc.contributor.authorMorris, Chris A.
dc.contributor.authorMwakaya, Joel
dc.contributor.authorPlastow, Graham
dc.contributor.authorSim, Warren
dc.contributor.authorSkow, Loren C.
dc.contributor.authorSmith, Timothy
dc.contributor.authorSonstegard, Tad S.
dc.contributor.authorSpelman, Richard J.
dc.contributor.authorTaylor, Jeremy F.
dc.contributor.authorThomas, Merle B.
dc.contributor.authorValentini, Alessio
dc.contributor.authorWilliams, Paul
dc.contributor.authorWomack, James
dc.contributor.authorWooliams, John A.
dc.contributor.authorLiu, Yue
dc.contributor.authorQin, Xiang
dc.contributor.authorWorley, Kim C.
dc.contributor.authorGao, Chuan
dc.contributor.authorGill, Clare A.
dc.contributor.authorJiang, Huaiyang
dc.contributor.authorLiu, Yue
dc.contributor.authorMoore, Stephen S.
dc.contributor.authorNazareth, Lynne V.
dc.contributor.authorRen, Yanru
dc.contributor.authorSong, Xing-Zhi
dc.contributor.authorBustamante, Carlos D.
dc.contributor.authorHernandez, Ryan D.
dc.contributor.authorMuzny, Donna M.
dc.contributor.authorNazareth, Lynne V.
dc.contributor.authorPatil, Shobha
dc.contributor.authorLucas, Anthony San
dc.contributor.authorFu, Qing
dc.contributor.authorKent, Matthew P.
dc.contributor.authorMoore, Stephen S.
dc.contributor.authorVega, Richard
dc.contributor.authorAbbey, Colette A.
dc.contributor.authorGao, Chuan
dc.contributor.authorGill, Clare A.
dc.contributor.authorGreen, Ronnie D.
dc.contributor.authorMatukumalli, Lakshmi K.
dc.contributor.authorMatukumalli, Aruna
dc.contributor.authorMcWilliam, Sean
dc.contributor.authorSchnabel, Robert D.
dc.contributor.authorSclep, Gert
dc.contributor.authorAjmone-Marsan, Paolo
dc.contributor.authorBryc, Katarzyna
dc.contributor.authorBustamante, Carlos D.
dc.contributor.authorChoi, Jungwoo
dc.contributor.authorGao, Hong
dc.contributor.authorGrefenstette, John J.
dc.contributor.institutionARS
dc.contributor.institutionBaylor Coll Med
dc.contributor.institutionUniv Missouri
dc.contributor.institutionCSIRO
dc.contributor.institutionUniv New England
dc.contributor.institutionAlliance Anim Genome Res
dc.contributor.institutionTexas A&M Univ
dc.contributor.institutionUSDA Cooperat State Res Educ & Extens Serv
dc.contributor.institutionNorwegian Univ Life Sci
dc.contributor.institutionGeorge Mason Univ
dc.contributor.institutionAgRes
dc.contributor.institutionUniv Cattolica Sacro Cuore
dc.contributor.institutionIAEA
dc.contributor.institutionEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionInt Livestock Res Inst
dc.contributor.institutionUniv Edinburgh
dc.contributor.institutionDirect Natl Elevage
dc.contributor.institutionEthiopian Inst Agr Res
dc.contributor.institutionLIC
dc.contributor.institutionCornell Univ
dc.contributor.institutionUniv Edinburgh Summerhall
dc.contributor.institutionUniv Alberta
dc.contributor.institutionUniv Tuscia
dc.contributor.institutionWellcome Trust Sanger Inst
dc.contributor.institutionUniv Melbourne
dc.contributor.institutionTrinity Coll Dublin
dc.contributor.institutionSimon Fraser Univ
dc.date.accessioned2013-09-30T18:25:14Z
dc.date.accessioned2014-05-20T13:42:36Z
dc.date.available2013-09-30T18:25:14Z
dc.date.available2014-05-20T13:42:36Z
dc.date.issued2009-04-24
dc.description.abstractThe imprints of domestication and breed development on the genomes of livestock likely differ from those of companion animals. A deep draft sequence assembly of shotgun reads from a single Hereford female and comparative sequences sampled from six additional breeds were used to develop probes to interrogate 37,470 single-nucleotide polymorphisms (SNPs) in 497 cattle from 19 geographically and biologically diverse breeds. These data show that cattle have undergone a rapid recent decrease in effective population size from a very large ancestral population, possibly due to bottlenecks associated with domestication, selection, and breed formation. Domestication and artificial selection appear to have left detectable signatures of selection within the cattle genome, yet the current levels of diversity within breeds are at least as great as exists within humans.en
dc.description.affiliationARS, USDA, Bovine Funct Genom Lab, BARC E, Beltsville, MD 20705 USA
dc.description.affiliationBaylor Coll Med, Human Genome Sequencing Ctr, Houston, TX 77030 USA
dc.description.affiliationBaylor Coll Med, Dept Mol & Human Genet, Houston, TX 77030 USA
dc.description.affiliationUniv Missouri, Div Anim Sci, Columbia, MO 65211 USA
dc.description.affiliationCSIRO, Livestock Ind, St Lucia, Qld 4067, Australia
dc.description.affiliationUniv New England, CRC, Beef Genet Technol, Armidale, NSW 2351, Australia
dc.description.affiliationAlliance Anim Genome Res, Bethesda, MD 20816 USA
dc.description.affiliationTexas A&M Univ, Dept Anim Sci, College Stn, TX 77843 USA
dc.description.affiliationARS, USDA, Natl Program Staff, Beltsville, MD 20705 USA
dc.description.affiliationUSDA Cooperat State Res Educ & Extens Serv, Washington, DC 20250 USA
dc.description.affiliationNorwegian Univ Life Sci, Ctr Integrat Genet, N-1432 As, Norway
dc.description.affiliationNorwegian Univ Life Sci, Dept Anim & Aquacultural Sci, N-1432 As, Norway
dc.description.affiliationGeorge Mason Univ, Dept Bioinformat & Computat Biol, Manassas, VA USA
dc.description.affiliationAgRes, Anim Genom, Invermay 9053, Mosgiel, New Zealand
dc.description.affiliationUniv Cattolica Sacro Cuore, Ist Zootecn, I-29100 Piacenza, Italy
dc.description.affiliationIAEA, Joint United Nations FAO, Div Nucl Tech Food & Agr, A-1400 Vienna, Austria
dc.description.affiliationEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Genet Resources & Biotechnol Ctr, BR-70770900 Brasilia, DF, Brazil
dc.description.affiliationUNESP, Dept Anim Prod & Hlth, IAEA, Collaborat Ctr Anim Genom & Bioinformat, BR-16050680 Aracatuba, SP, Brazil
dc.description.affiliationInt Livestock Res Inst, Nairobi 00100, Kenya
dc.description.affiliationTexas A&M Univ, Coll Vet Med & Biomed Sci, Dept Vet Integrat Biol Sci, College Stn, TX 77843 USA
dc.description.affiliationUniv Edinburgh, Royal Dick Sch Vet Studies, Roslin Inst, Roslin E25 9PS, Midlothian, Scotland
dc.description.affiliationDirect Natl Elevage, Conakry, Guinea
dc.description.affiliationEthiopian Inst Agr Res, Addis Ababa, Ethiopia
dc.description.affiliationEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Dairy Cattle Ctr, BR-36038330 Juiz de Fora, MG, Brazil
dc.description.affiliationAgRes, Anim Genom, Hamilton 3240, New Zealand
dc.description.affiliationEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Beef Cattle Ctr, BR-79002970 Campo Grande, MS, Brazil
dc.description.affiliationLIC, Res & Dev, Hamilton 3240, New Zealand
dc.description.affiliationInt Livestock Res Inst, Addis Ababa, Ethiopia
dc.description.affiliationCornell Univ, Dept Biol Stat & Computat Biol, Ithaca, NY 14853 USA
dc.description.affiliationUniv Edinburgh Summerhall, Royal Dick Sch Vet Studies, Edinburgh EH9 1QH, Midlothian, Scotland
dc.description.affiliationUniv Alberta, AgFor Ctr 410, Edmonton, AB T6G 2P5, Canada
dc.description.affiliationARS, USDA, US Meat Anim Res Ctr, Mol Genet Res Unit, Clay Ctr, NE 68933 USA
dc.description.affiliationUniv Tuscia, Dipartimento Prod Anim, I-01100 Viterbo, Italy
dc.description.affiliationTexas A&M Univ, Coll Vet Med & Biomed Sci, Dept Vet Pathobiol, College Stn, TX 77843 USA
dc.description.affiliationWellcome Trust Sanger Inst, Hinxton CB10 1SA, England
dc.description.affiliationUniv Melbourne, Fac Land & Food Resources, Parkville, Vic 3010, Australia
dc.description.affiliationTrinity Coll Dublin, Smurfit Inst Genet, Dublin 2, Ireland
dc.description.affiliationSimon Fraser Univ, Dept Mol Biol & Biochem, Burnaby, BC V5A 1S6, Canada
dc.description.affiliationUnespUNESP, Dept Anim Prod & Hlth, IAEA, Collaborat Ctr Anim Genom & Bioinformat, BR-16050680 Aracatuba, SP, Brazil
dc.description.sponsorshipNational Human Genome Research Institute of the National Institutes of Health
dc.description.sponsorshipU.S. Department of Agricultures Agricultural Research Service (USDA-ARS)
dc.description.sponsorshipCooperative State Research, Education and Extension Service (USDA CSREES)
dc.description.sponsorshipResearch Council of Norway
dc.description.sponsorshipAmerican Angus Association
dc.description.sponsorshipAmerican Hereford Association
dc.description.sponsorshipAmerican Jersey Cattle Association
dc.description.sponsorshipAgResearch (New Zealand)
dc.description.sponsorshipAustralian Brahman Breeders Association
dc.description.sponsorshipBeefmaster Breeders United
dc.description.sponsorshipEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.description.sponsorshipBrown Swiss Association
dc.description.sponsorshipCommonwealth Scientific and Industrial Research Organization
dc.description.sponsorshipDairy InSight
dc.description.sponsorshipGENO Breeding and Artificial Insemination Association-Norway
dc.description.sponsorshipHerd Book/France Limousin Selection
dc.description.sponsorshipHolstein Association USA
dc.description.sponsorshipInternational Atomic Energy Agency (IAEA)-United Nations Food and Agriculture Organization (FAO)/IAEA Vienna
dc.description.sponsorshipInternational Livestock Research Institute-Kenya
dc.description.sponsorshipItalian Piedmontese Breeders-Parco Tecnologico Padano
dc.description.sponsorshipItalian Romagnola Society-Universita Cattolica del Sacro Cuore
dc.description.sponsorshipLivestock Improvement Corporation
dc.description.sponsorshipMeat and Wool New Zealand
dc.description.sponsorshipNorth American Limousin Foundation
dc.description.sponsorshipRed Angus Association of America
dc.description.sponsorshipRoslin Institute for UK Guernsey
dc.description.sponsorshipSygen (now Genus)
dc.format.extent528-532
dc.identifierhttp://dx.doi.org/10.1126/science.1167936
dc.identifier.citationScience. Washington: Amer Assoc Advancement Science, v. 324, n. 5926, p. 528-532, 2009.
dc.identifier.doi10.1126/science.1167936
dc.identifier.issn0036-8075
dc.identifier.lattes9991374083045897
dc.identifier.urihttp://hdl.handle.net/11449/14816
dc.identifier.wosWOS:000265411200051
dc.language.isoeng
dc.publisherAmer Assoc Advancement Science
dc.relation.ispartofScience
dc.relation.ispartofjcr41.058
dc.relation.ispartofsjr14,142
dc.rights.accessRightsAcesso restrito
dc.sourceWeb of Science
dc.titleGenome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breedsen
dc.typeArtigo
dcterms.licensehttp://www.sciencemag.org/site/about/permissions.xhtml
dcterms.rightsHolderAmer Assoc Advancement Science
dspace.entity.typePublication
unesp.author.lattes9991374083045897
unesp.author.orcid0000-0002-5464-0658[44]
unesp.author.orcid0000-0002-5606-3970[25]
unesp.author.orcid0000-0002-7698-6617[23]
unesp.author.orcid0000-0003-4801-6207[22]
unesp.author.orcid0000-0001-7335-7092[27]
unesp.author.orcid0000-0002-8416-2087[3]
unesp.author.orcid0000-0003-2640-1825[113]
unesp.author.orcid0000-0001-8036-1161[37]
unesp.author.orcid0000-0001-5188-7957[87]
unesp.author.orcid0000-0001-5018-7641[118]
unesp.author.orcid0000-0002-1399-8450[124]
unesp.author.orcid0000-0003-4664-1404[34]
unesp.author.orcid0000-0002-6416-2717[16]
unesp.author.orcid0000-0003-4733-7519[86]
unesp.author.orcid0000-0001-9917-7946[24]
unesp.author.orcid0000-0002-5604-4550[75]
unesp.author.orcid0000-0002-9347-6379[38]
unesp.author.orcid0000-0002-2997-4592[41]
unesp.author.orcid0000-0002-3774-3110[78]
unesp.campusUniversidade Estadual Paulista (UNESP), Faculdade de Medicina Veterinária, Araçatubapt
unesp.departmentApoio, Produção e Saúde Animal - FMVApt

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Araçatuba - FMVA - Faculdade de Medicina Veterinária