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Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species

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dc.contributor.authorTysklind, Niklas
dc.contributor.authorBlanc-Jolivet, Céline
dc.contributor.authorMader, Malte
dc.contributor.authorMeyer-Sand, Barbara R. V. [UNESP]
dc.contributor.authorParedes-Villanueva, Kathelyn
dc.contributor.authorHonorio Coronado, Eurídice N.
dc.contributor.authorGarcía-Dávila, Carmen R.
dc.contributor.authorSebbenn, Alexandre M.
dc.contributor.authorCaron, Henri
dc.contributor.authorTroispoux, Valerie
dc.contributor.authorGuichoux, Erwan
dc.contributor.authorDegen, Bernd
dc.contributor.institutionUniversité de Guyane
dc.contributor.institutionThünen Institute of Forest Genetics
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionUniversidad Autónoma Gabriel René Moreno
dc.contributor.institutionInstituto de Investigaciones de la Amazonía Peruana (IIAP)
dc.contributor.institutionInstituto Florestal de São Paulo
dc.contributor.institutionUniversity Bordeaux
dc.date.accessioned2019-10-06T15:45:24Z
dc.date.available2019-10-06T15:45:24Z
dc.date.issued2019-09-15
dc.description.abstractLow coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping.en
dc.description.affiliationINRA UMR0745 EcoFoG AgroParisTech Cirad CNRS Université des Antilles Université de Guyane, Campus Agronomique, Avenue de France
dc.description.affiliationThünen Institute of Forest Genetics, Sieker Landstrasse 2
dc.description.affiliationSchool of Natural Sciences and Engineering São Paulo State University (UNESP)
dc.description.affiliationCarrera de Ingeniería Forestal Laboratorio de Dendrocronología Facultad de Ciencias Agrícolas Universidad Autónoma Gabriel René Moreno, Km 9 carretera al Norte, El Vallecito
dc.description.affiliationInstituto de Investigaciones de la Amazonía Peruana (IIAP), Av. José A. Quiñones km 2.5
dc.description.affiliationInstituto Florestal de São Paulo, CP 1322
dc.description.affiliationBIOGECO INRA University Bordeaux
dc.description.affiliationUnespSchool of Natural Sciences and Engineering São Paulo State University (UNESP)
dc.description.sponsorshipBundesministerium für Ernährung und Landwirtschaft
dc.description.sponsorshipConseil Régional Aquitaine
dc.description.sponsorshipAgence Nationale de la Recherche
dc.description.sponsorshipIdConseil Régional Aquitaine: 20030304002FA
dc.description.sponsorshipIdConseil Régional Aquitaine: 20040305003FA
dc.description.sponsorshipIdAgence Nationale de la Recherche: ANR-10-EQPX-16-01
dc.description.sponsorshipIdAgence Nationale de la Recherche: ANR-10-LABX-25-01
dc.format.extent337-339
dc.identifierhttp://dx.doi.org/10.1007/s12686-019-01090-2
dc.identifier.citationConservation Genetics Resources, v. 11, n. 3, p. 337-339, 2019.
dc.identifier.doi10.1007/s12686-019-01090-2
dc.identifier.issn1877-7260
dc.identifier.issn1877-7252
dc.identifier.scopus2-s2.0-85066884617
dc.identifier.urihttp://hdl.handle.net/11449/187726
dc.language.isoeng
dc.relation.ispartofConservation Genetics Resources
dc.rights.accessRightsAcesso aberto
dc.sourceScopus
dc.subjectCarapa guianensis
dc.subjectCarapa surinamensis
dc.subjectDNA-fingerprints
dc.subjectGeographical origin
dc.subjectMassARRAY
dc.subjectMiSeq
dc.subjectRADSeq
dc.subjectTropical timber
dc.titleDevelopment of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa speciesen
dc.typeArtigo
dspace.entity.typePublication

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