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Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs

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dc.contributor.authorVicentini, R.
dc.contributor.authorDel Bem, L. E V
dc.contributor.authorvan Sluys, M. A.
dc.contributor.authorNogueira, F. T S [UNESP]
dc.contributor.authorVincentz, M.
dc.contributor.institutionUniversidade Estadual de Campinas (UNICAMP)
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.contributor.institutionUniversidade de São Paulo (USP)
dc.date.accessioned2014-05-27T11:26:31Z
dc.date.available2014-05-27T11:26:31Z
dc.date.issued2012-06-01
dc.description.abstractSugarcane is the most important crop for sugar industry and raw material for bioethanol. Here we present a quantitative analysis of the gene content from publicly available sugarcane ESTs. The current sugarcane EST collection sampled orthologs for ~58 % of the closely-related sorghum proteome, suggesting that more than 10,000 sugarcane coding-genes remain undiscovered. Moreover the existence of more than 2,000 ncRNAs conserved between sugarcane and sorghum was revealed, among which over 500 are also detected in rice, supporting the existence of hundreds of conserved ncRNAs in grasses. New efforts towards sugarcane transcriptome sequencing were needed to sample the missing coding-genes as well as to expand the catalog of ncRNAs. © 2012 Springer Science+Business Media, LLC.en
dc.description.affiliationSystems Biology Laboratory, Center for Molecular Biology and Genetic Engineering State University of Campinas, Campinas, SP
dc.description.affiliationPlant Genetics Laboratory, Center for Molecular Biology and Genetic Engineering State University of Campinas, Campinas, SP
dc.description.affiliationDepartment of Genetics, Institute of Biosciences São Paulo State University, Botucatu, SP
dc.description.affiliationGenomes and Transposable Elements Laboratory, Department of Botany, Institute of Biosciences University of São Paulo, Rua do Matão, 277, 05508-090 São Paulo
dc.description.affiliationCenter for Molecular Biology and Genetic Engineering State University of Campinas, Av. Cândido Rondon, 400, Campinas, SP CEP: 13083-875
dc.description.affiliationUnespDepartment of Genetics, Institute of Biosciences São Paulo State University, Botucatu, SP
dc.format.extent199-205
dc.identifierhttp://dx.doi.org/10.1007/s12042-012-9103-z
dc.identifier.citationTropical Plant Biology, v. 5, n. 2, p. 199-205, 2012.
dc.identifier.doi10.1007/s12042-012-9103-z
dc.identifier.issn1935-9756
dc.identifier.issn1935-9764
dc.identifier.scopus2-s2.0-84862487607
dc.identifier.urihttp://hdl.handle.net/11449/73341
dc.language.isoeng
dc.relation.ispartofTropical Plant Biology
dc.relation.ispartofjcr1.686
dc.relation.ispartofsjr0,654
dc.relation.ispartofsjr0,654
dc.rights.accessRightsAcesso restrito
dc.sourceScopus
dc.subjectKeywords
dc.subjectncRNAs
dc.subjectOrthology
dc.subjectSorghum
dc.subjectSugarcane
dc.subjectTranscriptome
dc.subjectPoaceae
dc.subjectSorghum (genus)
dc.titleGene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAsen
dc.typeArtigo
dcterms.licensehttp://www.springer.com/open+access/authors+rights
dspace.entity.typePublication
unesp.campusUniversidade Estadual Paulista (UNESP), Instituto de Biociências, Botucatupt
unesp.departmentGenética - IBBpt

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