LEEK YELLOW STRIPE VIRUS ISOLATES FROM BRAZIL FORM A DISTINCT CLADE BASED ON THE P1 GENE
| dc.contributor.author | Bampi, D. [UNESP] | |
| dc.contributor.author | Mituti, T. | |
| dc.contributor.author | Pavan, M. A. [UNESP] | |
| dc.contributor.author | Hammond, J. | |
| dc.contributor.author | Krause-Sakate, R. [UNESP] | |
| dc.contributor.institution | Universidade Estadual Paulista (Unesp) | |
| dc.contributor.institution | Universidade de São Paulo (USP) | |
| dc.contributor.institution | ARS | |
| dc.date.accessioned | 2018-11-26T16:19:05Z | |
| dc.date.available | 2018-11-26T16:19:05Z | |
| dc.date.issued | 2015-11-01 | |
| dc.description.abstract | The complete genome sequence of a garlic isolate of Leek yellow stripe virus (LYSV) from Brazil (LYSV-MG) was determined and its phylogenetic relationships with other LYSV isolates from other parts of the world were inferred. The LYSV-MG genome consists of 10,341 nucleotides and encodes a polyprotein of 3,221 amino acids. Brazilian LYSV isolates are more closely related to S-type than to N-type isolates but do not have a deletion in the P1 gene. Partial nucleotide sequence analysis of the P1 gene revealed 97-99% identity among Brazilian isolates, and 51-64% identity between Brazilian isolates and isolates from other countries for which sequence information is available in GenBank. The Brazilian isolates formed a monophyletic group closest to the S-type isolates and one isolate from Okinawa (O-type). These data suggest that Brazilian LYSV isolates are derived from an ancestral source of the Okinawa and S-type isolates, prior to the occurrence of the P1 deletion and divergence of the S-type isolates. | en |
| dc.description.affiliation | UNESP, FCA, Dept Protecao Vegetal, BR-18610307 Botucatu, SP, Brazil | |
| dc.description.affiliation | Univ Sao Paulo, ESALQ, Dept Fitopatol & Nematol, BR-13418900 Piracicaba, SP, Brazil | |
| dc.description.affiliation | ARS, USDA, USNA, Floral & Nursery Plants Res Unit, Beltsville, MD 20705 USA | |
| dc.description.affiliationUnesp | UNESP, FCA, Dept Protecao Vegetal, BR-18610307 Botucatu, SP, Brazil | |
| dc.description.sponsorship | Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) | |
| dc.description.sponsorship | Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) | |
| dc.description.sponsorshipId | FAPESP: 2010/16148-9 | |
| dc.description.sponsorshipId | CAPES: PDSE 99999.011577/2013-04 | |
| dc.format.extent | 457-463 | |
| dc.identifier.citation | Journal Of Plant Pathology. Pisa: Edizioni Ets, v. 97, n. 3, p. 457-463, 2015. | |
| dc.identifier.issn | 1125-4653 | |
| dc.identifier.uri | http://hdl.handle.net/11449/161090 | |
| dc.identifier.wos | WOS:000367302200006 | |
| dc.language.iso | eng | |
| dc.publisher | Edizioni Ets | |
| dc.relation.ispartof | Journal Of Plant Pathology | |
| dc.rights.accessRights | Acesso restrito | pt |
| dc.source | Web of Science | |
| dc.subject | Allium sativum | |
| dc.subject | Potyvirus | |
| dc.subject | variability | |
| dc.subject | classification | |
| dc.title | LEEK YELLOW STRIPE VIRUS ISOLATES FROM BRAZIL FORM A DISTINCT CLADE BASED ON THE P1 GENE | en |
| dc.type | Artigo | pt |
| dcterms.rightsHolder | Edizioni Ets | |
| dspace.entity.type | Publication | |
| relation.isDepartmentOfPublication | f6148f54-a37e-4f7e-ac22-db40876b0bd1 | |
| relation.isDepartmentOfPublication.latestForDiscovery | f6148f54-a37e-4f7e-ac22-db40876b0bd1 | |
| unesp.department | Proteção Vegetal - FCA | pt |