Leek yellow stripe virus isolates from Brazil form a distinct clade based on the P1 gene
| dc.contributor.author | Bampi, D. [UNESP] | |
| dc.contributor.author | Mituti, T. | |
| dc.contributor.author | Pavan, M. A. [UNESP] | |
| dc.contributor.author | Hammond, J. | |
| dc.contributor.author | Krause-Sakate, R. [UNESP] | |
| dc.contributor.institution | Universidade Estadual Paulista (Unesp) | |
| dc.contributor.institution | Universidade de São Paulo (USP) | |
| dc.contributor.institution | Floral and Nursery Plants Research Unit | |
| dc.date.accessioned | 2018-12-11T16:41:11Z | |
| dc.date.available | 2018-12-11T16:41:11Z | |
| dc.date.issued | 2015-01-01 | |
| dc.description.abstract | The complete genome sequence of a garlic isolate of Leek yellow stripe virus (LYSV) from Brazil (LYSV-MG) was determined and its phylogenetic relationships with other LYSV isolates from other parts of the world were inferred. The LYSV-MG genome consists of 10,341 nucleotides and encodes a polyprotein of 3,221 amino acids. Brazilian LYSV isolates are more closely related to S-type than to N-type isolates but do not have a deletion in the P1 gene. Partial nucleotide sequence analysis of the P1 gene revealed 97-99% identity among Brazilian isolates, and 51-64% identity between Brazilian isolates and isolates from other countries for which sequence information is available in GenBank. The Brazilian isolates formed a monophyletic group closest to the S-type isolates and one isolate from Okinawa (O-type). These data suggest that Brazilian LYSV isolates are derived from an ancestral source of the Okinawa and S-type isolates, prior to the occurrence of the P1 deletion and divergence of the S-type isolates. | en |
| dc.description.affiliation | FCA-UNESP Departamento Proteção Vegetal, Rua José Barbosa de Barros, 1780 | |
| dc.description.affiliation | Escola Superior de Agricultura Luiz de Queiroz–Universidade de São Paulo ESALQ/USP Departamento de Fitopatologia e Nematologia, Av. Pádua Dias, 11 | |
| dc.description.affiliation | USDA-ARS USNA Floral and Nursery Plants Research Unit, 10300 Baltimore Avenue, B-010A | |
| dc.description.affiliationUnesp | FCA-UNESP Departamento Proteção Vegetal, Rua José Barbosa de Barros, 1780 | |
| dc.format.extent | 457-463 | |
| dc.identifier | http://dx.doi.org/10.4454/JPP.V97I3.021 | |
| dc.identifier.citation | Journal of Plant Pathology, v. 97, n. 3, p. 457-463, 2015. | |
| dc.identifier.doi | 10.4454/JPP.V97I3.021 | |
| dc.identifier.issn | 1125-4653 | |
| dc.identifier.scopus | 2-s2.0-84959153891 | |
| dc.identifier.uri | http://hdl.handle.net/11449/168419 | |
| dc.language.iso | eng | |
| dc.relation.ispartof | Journal of Plant Pathology | |
| dc.relation.ispartofsjr | 0,276 | |
| dc.rights.accessRights | Acesso restrito | pt |
| dc.source | Scopus | |
| dc.subject | Allium sativum | |
| dc.subject | Classification | |
| dc.subject | Potyvirus | |
| dc.subject | Variability | |
| dc.title | Leek yellow stripe virus isolates from Brazil form a distinct clade based on the P1 gene | en |
| dc.type | Artigo | pt |
| dspace.entity.type | Publication | |
| relation.isOrgUnitOfPublication | ef1a6328-7152-4981-9835-5e79155d5511 | |
| relation.isOrgUnitOfPublication.latestForDiscovery | ef1a6328-7152-4981-9835-5e79155d5511 | |
| unesp.campus | Universidade Estadual Paulista (UNESP), Faculdade de Ciências Agronômicas, Botucatu | pt |