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Complete chloroplast genome of Myracrodruon urundeuva and its phylogenetics relationships in Anacardiaceae family

dc.contributor.authorRossini, Bruno Cesar [UNESP]
dc.contributor.authorde Moraes, Mario Luiz Teixeira [UNESP]
dc.contributor.authorMarino, Celso Luis [UNESP]
dc.contributor.institutionUniversidade Estadual Paulista (Unesp)
dc.date.accessioned2021-06-25T11:14:29Z
dc.date.available2021-06-25T11:14:29Z
dc.date.issued2021-04-01
dc.description.abstractContinuous exploratory use of tree species is threatening the existence of several plants in South America. One of these threatened species is Myracroduron urundeuva, highly exploited due to the high quality and durability of its wood. The chloroplast (cp) has been used for several evolutionary studies as well traceability of timber origin, based on its gene sequences and simple sequence repeats (SSR) variability. Cp genome organization is usually consisting of a large single copy and a small single copy region separated by two inverted repeats regions. We sequenced the complete cp genome from M. urundeuva based on Illumina next-generation sequencing. Our results show that the cp genome is 159,883 bp in size. The 36 SSR identified ranging from mono- to hexanucleotides. Positive selection analysis revealed nine genes related to photosystem, protein synthesis, and DNA replication, and protease are under positive selection. Genome comparison a other Anacardiaceae chloroplast genomes showed great variability in the family. The phylogenetic analysis using complete chloroplast genome sequences of other Anacardiaceae family members showed a close relationship with two other economically important genera, Pistacia and Rhus. These results will help future investigations of timber monitoring and population and evolutionary studies.en
dc.description.affiliationBiotechnology Institute (IBTEC) UNESP-Univ Estadual Paulista
dc.description.affiliationDepartment of Biochemical and Biological Sciences UNESP-Univ Estadual Paulista
dc.description.affiliationFaculty of Engineer UNESP-Univ Estadual Paulista
dc.description.affiliationUnespBiotechnology Institute (IBTEC) UNESP-Univ Estadual Paulista
dc.description.affiliationUnespDepartment of Biochemical and Biological Sciences UNESP-Univ Estadual Paulista
dc.description.affiliationUnespFaculty of Engineer UNESP-Univ Estadual Paulista
dc.description.sponsorshipConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
dc.description.sponsorshipIdCNPq: 303103/2017-5
dc.format.extent801-814
dc.identifierhttp://dx.doi.org/10.1007/s12298-021-00989-1
dc.identifier.citationPhysiology and Molecular Biology of Plants, v. 27, n. 4, p. 801-814, 2021.
dc.identifier.doi10.1007/s12298-021-00989-1
dc.identifier.issn0974-0430
dc.identifier.issn0971-5894
dc.identifier.lattes0165348738208319
dc.identifier.orcid0000-0003-4524-954X
dc.identifier.scopus2-s2.0-85104114200
dc.identifier.urihttp://hdl.handle.net/11449/208579
dc.language.isoeng
dc.relation.ispartofPhysiology and Molecular Biology of Plants
dc.sourceScopus
dc.subjectAroeira
dc.subjectBrazilian savannah
dc.subjectConservation
dc.subjectMicrosatellite
dc.subjectTropical tree
dc.titleComplete chloroplast genome of Myracrodruon urundeuva and its phylogenetics relationships in Anacardiaceae familyen
dc.typeArtigo
unesp.author.lattes0165348738208319[3]
unesp.author.orcid0000-0002-5685-9610[1]
unesp.author.orcid0000-0003-4524-954X[3]
unesp.campusUniversidade Estadual Paulista (Unesp), Instituto de Biociências, Botucatupt
unesp.departmentGenética - IBBpt

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