GHap: An R package for genome-wide haplotyping
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2016-09-15
Autores
Utsunomiya, Yuri T. [UNESP]
Milanesi, Marco [UNESP]
Utsunomiya, Adam T. H. [UNESP]
Ajmone-Marsan, Paolo
Garcia, José F. [UNESP]
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The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.
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Bioinformatics, v. 32, n. 18, p. 2861-2862, 2016.